SE2850734

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9739
  • Sorghum bicolor
  • SE2850734
  • PIF/harbinger
  • To1
  • chromosome_4:9776294-9776540
  • TTA
  • AGGCCTTGTTTAGATCCAAAAACTTTTTGGATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               --CC        TTT                GCACTTTCGTTTTTATTTGACAAACATTATCCAATCATGGAGCAACTAGGCTTAAAAGATTCGTCTCGTGATTTACA
  AGGCCTTGTTTAGAT    AAAAACTT   GGATTTTGATACTGTA                                                                             
  |||||||||||||||    ||||||||   ||||||||||||||||                                                                             G
  TCCGGAACAAATCTA    TTTTTGGA   TTTGAAATGTTCTAAG                                                                             
AT               TTTT        --T                GGATAGTGTAGCTTAGAACGCTGTGTACATATTTTGTAATTTATATCTATTTTTTCTATTGATTAACGTGTCAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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