Plant MITE

SE2830736

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9741
Sorghum bicolor
SE2830736
hAT
Hat42
chromosome_10:42791052-42791361
CCAGTGTC
CAGTGTCCATGGACGGAGCCAGCGGTGGGGCT

Secondary structure and sequence

TSD TIR

5'

3'

 C  G  TC  T            ----------C  T      A       TCCAGCCCCCCCTACCGCTGCTGCGCCAATGGAATTTCTAGTGATTTCCTTCTAATTGTAAACACAAATGTATAAGATAGGGTGGGCTGAGACCTTTATTTTTTAAGAT
  CA TG  CA GGACGGAGCCAG           GG GGGGCT GGGGGGC                                                                                                             
  || ||  || ||||||||||||           || |||||| |||||||                                                                                                             A
  GT AC  GT CCTGCTTCGGTC           CC CCCCGA GTTGTTT                                                                                                             
CT  G  -C  C            CTTTTTTTTAT  T      -       TCATGATGTAACTGAATCGAGATGATATTAGGAAGTGTTATCTTTTTTATATTATTAAACTTAATCAAAATATAACTTTTATAGTTACTTCCTACTCCAAGTGTTTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830736

CCAGTGTCCATGGACGGAGCCAGCGGTGGGGCTAGGGGGGCTCCAGCCCCCCCTACCGCTGCTGCGCCAATGGAATTTCTAGTGATTTCCTTCTAATTGTAAACACAAATGTATAAGATAGGGTGGGCTGAGACCTTTATTTTTTAAGATATATTTTGTGAACCTCATCCTTCATTGATATTTTCAATATAAAACTAATTCAAATTATTATATTTTTTCTATTGTGAAGGATTATAGTAGAGCTAAGTCAATGTAGTACTTTTGTTGAGCCCCTCCTATTTTTTTTCCTGGCTTCGTCCCTGCCAGTGTC

Copy Cancel