SE2850740

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9745
  • Sorghum bicolor
  • SE2850740
  • PIF/harbinger
  • To2
  • chromosome_2:10624946-10625193
  • TAA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ACCCCAAAAA   AAAA  TTTCAAGATTCCCGTCACATCGAATCTTGCGACACATGCATGAAGCATTAAATATAGACGAAAGCAAAAACTAATTACACAGTTTAGCTGTAAA
  AGGCCTTGTTTAGTTC          GCA    GT                                                                                              
  ||||||||||||||||          |||    ||                                                                                               
  TCCGGAACAAATCAAG          GCT    TT                                                                                              
AA                ----------   ----  TCTAAAGCCTAAAGCCATGACATCGTAAAAGCAAACAAACACTGTTTATAATAGATTAATACCTGATTGATCCTAGTTTTCTAAGCAGAGCGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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