SE2850742

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9747
  • Sorghum bicolor
  • SE2850742
  • PIF/harbinger
  • To2
  • chromosome_4:13331061-13331570
  • TGA
  • AGGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TG                       T          -CGACACTGT   ACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGTACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAACTTTTCAAAGTTTGACCAAATTTATATGATAAAATAATAATTGTTATGATACCAACTAAATATCATTAGATTCTTTCTTAACTATATTTTCATAGTATACTCACTTTACGTTACAAA
  AGGCCTTGTTTAGTTCCAAAAAA TTTGCAAAAT          AGC                                                                                                                                                                                                              
  ||||||||||||||||||||||| ||||||||||          |||                                                                                                                                                                                                              T
  TCCGGAACAAATCAAGGTTTTTT AAACGTTTTA          GGG                                                                                                                                                                                                              
AG                       T          AAAAGTCTAA   GTAGTGTAGCTTAGAAATCTGCGTACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAATGTGTCAAACCAGCTTTAACCGCTCTATTTAGAAAACTCAGATTAATCATGAGGGAGGTAGGGTTTAACATTCAATAAGGTTCTTAGAACCTCTCAGTTTCGTAAAAGTGCAAATTGGTTTTAATATCTCACTTTATGATTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End