SE2850753

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9758
  • Sorghum bicolor
  • SE2850753
  • PIF/harbinger
  • To1
  • chromosome_6:55746822-55747347
  • TTA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -CACTCCAAAAACTAAAAA   TTCAAGATTCTCCGTCACATTAAATCTTGTGTCACATGCATGAAGCACTAAATATAGGCAAAAATAAAAACTAATTGCACAGTTTATCTGTAAATCGTGGGATGAATCTTTTAAGTCTAGTTACTCCATGATTGGACAATGTTTATCAAATAAAAACGAAAGTGCTATAGTCGCGAAAACCAAAAGATTTTTAGAACTAAATAAGGCCTAATGCATGCATGGAG
  AGGCCTTGTTTAGTT                   CTT                                                                                                                                                                                                                                
  |||||||||||||||                   |||                                                                                                                                                                                                                                T
  TCCGGAACAAATCAA                   CAG                                                                                                                                                                                                                                
AT               CCTCTTTTTTTTAAATCCA   TGTAGTCTACAAGGCATCCTACAGCCTTCCCACAAGCCTATGATTATTTTTTGATTAATGTATCGAGTCGATCTTTGACGTTCTGCTTAAATAATTCGGATTAATTAGATAGTAATCGTGTATATCCAACGACTCCGATTAGTACCTGATTGATCCGAATTTTCTAAGCAGAGCACTAAAGGTTGATTTGACACATTAATCAAATAAAAAATAGATATAAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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