SE2830757

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9762
  • Sorghum bicolor
  • SE2830757
  • hAT
  • Hat52
  • chromosome_9:58301027-58301766
  • CTCTTTCC
  • CAGCGCCGGCCCTGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTTTCC   C             GC      A GGGGCGGCCGCCCTAGGCCTCCAATCCCATGGGGCCCCATCGGAGGTATACCATTATATGTATGCAGGCGTTGCATCTTGCTACTTGCTAGCCAGCAGGATTAACAAATGCAGCTCACTTTATACTAGCGCGTATATTGTGCCAAATTATCTATCACACATGAGCATATGCATGTACTTGTATGTATTTACTTCTCGGTTCTCACAATACTTCGTTCCTGAGCTGTCTGGTGGGCCCCTTATGGCTCCAGCATATAATAGTTTAGGTTTAGTTATACATATTATGCTTTATTTGCTCAAGAAAAATATGTATATTATTCTTAGTACATTACGCTG
        CAG GCCGGCCCTGAGG  GGGCGG C                                                                                                                                                                                                                                                                                                                                               
        ||| |||||||||||||  |||||| |                                                                                                                                                                                                                                                                                                                                               C
        GTC CGGCCGGGACTCC  AATCCC C                                                                                                                                                                                                                                                                                                                                               
CCTTTCTC   A             AA      - GGGTCCCGCTTCGGCTCTAAATCTCCGGGGATTATATGTGTACCTATTTTGTGGATCTCCCTGTTTCAAAATTCAGAGATGGTAAACTTTTACTCTTTTACCATGTTTCACTTACTTGATTTAAATATATCTCTCACAATTTCTATTTACGAATCCATGTTACGTATATTTTTGAAACCTCTATAAAATATGTTTTATAATTTTGATTCTTTATTTCTTCATCCAATTCGGAACAGTATAAGTATACGCGAACCTTCTCCATTCTATCACTTCTTTAGATCGTATAACGAGTTCGAAAGTACAGAATGAATTATCTTCTACTTCTTTCGTTCAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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