SE2850760

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9765
  • Sorghum bicolor
  • SE2850760
  • PIF/harbinger
  • To87
  • chromosome_4:55934361-55934669
  • TAA
  • AGGCCTTGTTCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             AGAAC    GGAACGTGGCCCGTTCCAAGTGGATCGGCTGGACTCAGAATTAATCTTCGTCCAATTGAGAATAGATGTTAGGTTAATTTAGAGTTGAATTATAGCTGGCTCATTCCTAGCGGTTTTTTTGTCTCATTCC
  AGGCCTTGTTCGT     GGCC                                                                                                                                  
  |||||||||||||     ||||                                                                                                                                  A
  TCCGGAACAAGCA     GGTA                                                                                                                                  
AA             AAGAA    TAAGTTTTGCCCAGACAAAGAGAAGGATCCGACCTAACTCACCAAGGATCACCAAGTCACTTTGAACCAATCATATAATTTTTCCCCAGACCAAAAGAGGGGCCCTCATCCTCGGGCCCTTAACTAGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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