SE2830783

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9788
  • Sorghum bicolor
  • SE2830783
  • hAT
  • Hat55
  • chromosome_2:65981597-65982018
  • ACTGCATA
  • TGCATATAAACCTGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AC    TA          ------------       TGAGATCCAAACCAAACCCACACCAATCCAAAACATATATATGTGAAAGTCAAATCCAAACCAAATTAGACCATGACTTCAATCATCCACACCAAACCATACCACTTATGCACTAGACCCATTAAAATACATTTCCAACCCACCATTTCACCGGCACCTCATGCTATTGTTTATATTTAG
  TGCA  TAAACCTGAC            AGTGGGC                                                                                                                                                                                    
  ||||  ||||||||||            |||||||                                                                                                                                                                                     
  ACGT  ATTTGGACTG            ATTTTGG                                                                                                                                                                                    
AT    CA          TTACCAAACCCA       CTCAAAAAACCAAACCAAAATGAAAACCCGACATAACCAAACCTAACTTTGTCCGACTTTTCCGACAACCCGGTCAAACCAAACCCGGGATAATTTCACCCGACTTGACCAAACCGACATTTATTATCTCAAATGTTACTAAAAAATAAGATAGATAAATAAAAAACGAAAACAAATACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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