SE2810785

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9790
  • Sorghum bicolor
  • SE2810785
  • Tc1/Mariner
  • St1
  • chromosome_2:45101407-45101646
  • TA
  • TACTCCCTCCGTCCCAAAAAGAGTGACGTTTTGACTTTTAGAAATCGTGTTTGACCGTTCGTTTTATTCAAAAATTTTATGTAAATTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                         A      -  C      AA   G       C                  A            --    AAATAAATAA  CATTAGTAAAGTATCTCT
TACTCCCTCCGTCCCAAAAAGAGTG CGTTTT GA TTTTAG  ATC TGTTTGA CGTTCGTTTTATTCAAAA TTTTATGTAAAT  TATA          AT                  
||||||||||||||||||||||||| |||||| || ||||||  ||| ||||||| |||||||||||||||||| ||||||||||||  ||||          ||                  A
ATGAGGGAGGCAGGGTTTTTCTCAC GCAAAA CT AAAGTC  TAG ACAAACT GTAGGCAGAATAAGTTTT AAAATGTATTTA  ATAT          CA                  
                         A      T  T      AG   A       A                  A            TA    ----ATAAAA  ATTCTGGATAAAATAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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