SE2850789

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9794
  • Sorghum bicolor
  • SE2850789
  • PIF/harbinger
  • To1
  • chromosome_2:65342760-65342997
  • TAA
  • AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                GGAA        ---           CTGTAGCACTTTCGTTTGTTTGTGACAAATATTATCCAATCATAGACTAACTAGGATCAAAAGATTCGTCTCGCGAT
  AGGCCTTGTTTAGTTT    AAAATTTT   GGATTTCGCTA                                                                             
  ||||||||||||||||    ||||||||   |||||||||||                                                                             T
  TCCGGAACAAATCAAG    TTTTAAAA   TCTAAGGGGCA                                                                             
AA                --GG        AGT           GTGTAGCTTAGAACGCCGTGTACGTACTTTGTAATTTATATCTGCTTTTGTTTTTGATTAATGCGTCAAATGGACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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