SE2850790

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9795
  • Sorghum bicolor
  • SE2850790
  • PIF/harbinger
  • To4
  • chromosome_1:2642215-2642463
  • CAA
  • GGCCTTGTTTAGTTCCTAAAGAATTTTGCAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA                T    AA     C      TTTTCACATTTTTCATCACA   AA ----    -----    ACATGCATGAACATTAAATATAGATAAAAGAAATAACTAATTACACAGTTTATCTGTAAT
   GGCCTTGTTTAGTTCC AAAG  TTTTG AAAAAT                    TCG  T    CTTG     CGGC                                                            
   |||||||||||||||| ||||  ||||| ||||||                    |||  |    ||||     ||||                                                             
   CCGGAACAAATCAAGG TTTC  AAAAC TTTTTA                    CTC  G    ATCA     GTAA                                                            
AAC                -    AA     -      --------------------   -- TAAC    TGAAA    ACATAAACTGTTTATAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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