SE2850791

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9796
  • Sorghum bicolor
  • SE2850791
  • PIF/harbinger
  • To1
  • chromosome_1:65061211-65061448
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA               G      ----TT      TT -  - C    --G  GCACTTTCGTTTTT  --- T  --   ACATTGTCCAATTATGGAGTAACTAGGCTTAAAAGATTCATCTCACAAATTA
  AGGCCTTGTTTAGTT GCAAAA      TTGGGT  T TG G TACT   TA              AT   T GA  CAA                                                    
  ||||||||||||||| ||||||      ||||||  | || | ||||   ||              ||   | ||  |||                                                    C
  TCCGGAACAAATCAA CGTTTT      TTCTAA  G GG A GTGT   TT              AG   C CA  GTA                                                    
AA               G      TAAAAG      -- G  C -    AGC  --------------  AAA -  GC   CGTACCTCGAAATTTATATCTGCTTTTATTTTTGATTAACGTGTCAAATGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End