Plant MITE

SE2850793

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9798
Sorghum bicolor
SE2850793
PIF/harbinger
To16
chromosome_2:77401602-77401813
TAA
AGGGCACTCACAATGCAAGACTCTATCACAGAGTCCAAG

Secondary structure and sequence

TSD TIR

5'

3'

TA                 A          C      -C   ACACTTAATTACATA        GG       -C        - AG  TATTTATTGAAGAAAGAGGTAGAAAA
  AGGGCACTCACAATGCA GACTCTATCA AGAGTC  AAG               TTATTTAT  TATTTTG  TGATGTGG C  CA                          
  ||||||||||||||||| |||||||||| ||||||  |||               ||||||||  |||||||  |||||||| |  ||                          A
  TCCCGTGAGTGTTACGT CTGAGATAGT TCTCAG  TTC               AATAAATA  ATAGAGC  ATTACACC G  TC                          
AA                 -          A      AT   ---------------        --       TT        T AA  TCAGATTTATTCTGAACCTCAGAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850793

TAAGGGCACTCACAATGCAAGACTCTATCACAGAGTCCAAGACACTTAATTACATATTATTTATGGTATTTTGCTGATGTGGCAGCATATTTATTGAAGAAAGAGGTAGAAAAAATAAGACTCCAAGTCTTATTTAGACTCTAAGTCCACATTATTCGAGATAATAAATAACTTTAGACTCTATGATAGAGTCTGCATTGTGAGTGCCCTAA

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