Plant MITE

SE2830800

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9805
Sorghum bicolor
SE2830800
hAT
Hat56
chromosome_10:50797245-50797417
CTTAAATC
CAGGGGCGAAGCTAGAACGAATTGGATGGGGGTGCCT

Secondary structure and sequence

TSD TIR

5'

3'

CTTAAATC             AGA   AAT   -A  G        -CTCT       --         TTTAAT    A  AA   T   AAT
        CAGGGGCGAAGCT   ACG   TGG  TG GGGTGCCT     CTTATAG  GTTTGAAAA      CCAC AC  TGG GAA   
        |||||||||||||   |||   |||  || ||||||||     |||||||  |||||||||      |||| ||  ||| |||    
        GTCCCCGCTTCGA   TGC   ATC  AC CCCACGGG     GGGTGTT  TAAACTTTT      GGTG TG  ATC CTT   
CTAAATTC             ---   ATC   GA  G        TCCGT       TT         -----T    A  --   -   GTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830800

CTTAAATCCAGGGGCGAAGCTAGAACGAATTGGATGGGGGTGCCTCTCTCTTATAGGTTTGAAAATTTAATCCACAACAATGGTGAAAATGTGTTCCTAGTAGTGGTTTTTCAAATTTTTGTGGGTGCCTGGGCACCCGCAAGCTACTACGTAGCTTCGCCCCTGCTTAAATC

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