SE2850805

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9810
  • Sorghum bicolor
  • SE2850805
  • PIF/harbinger
  • To78
  • chromosome_2:77575232-77575507
  • TAA
  • AGGGCCTGTTTAGATCCCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               - --      CTTTACATC             ----C  TAA     ATATTCAAATAG    TT GA   ---    CAAATTTTTTGGTCAACAAGACACATGACACGGGTCCCTAAGCAAGTTTACA
  AGGGCCTGTTTAGAT C  CCAAAT         CCAAAACTTTTGG     TG   ACTTT            GTGT  A  TGC   TTCC                                                    
  ||||||||||||||| |  ||||||         |||||||||||||     ||   |||||            ||||  |  |||   ||||                                                    C
  TCCCGGACAAATCTA G  GGTTTG         GGTTTTGAAAACC     AC   TGAAA            TAGA  T  GTC   CGAA                                                    
AA               C TC      -------TC             TCTTT  TCG     AACCTTCTTACC    TT --   CCC    CATTTTGAACCGACATTTCTAAACCTTAAACCCTGGAACCTCGGGTTTTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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