SE2820806

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9811
  • Sorghum bicolor
  • SE2820806
  • Mutator
  • M17
  • chromosome_3:57572008-57572461
  • GACTAGAAA
  • CTAGAAAGGCAAAATATGTGGTGCAAACTACATGCTAAGTGGAAATATAAAAACCAATTCAAAAAACATA

Secondary structure and sequence

TSD    TIR
5'



3'
 GA    AAA  C                           A          A                     ACTC    A   T  AAAAAA             A  AT       A  C          A    C              TA               A         T                   T                            AA
   CTAG   GG AAAATATGTGGTGCAAACTACATGCTA GTGGAAATAT AAAACCAATTCAAAAAACATA    AGTG TTT GA      AAATCTGAAATTT GT  GTCCATA TG ATACAAATAT TACT ACATGCAAAAGATG  AAGCAAACTCAAATT GAAAAAATT ATACGAAAATGTTAAATTT ATATGCATGTGCACTAGAAGATAAAATC  
   ||||   || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    |||| ||| ||      ||||||||||||| ||  ||||||| || |||||||||| |||| ||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  T
   GATC   CC TTTTATACACCACGTTTGGTGTACGAT CACCTTTGTA TTTTGGTTAAGTTTTTTGTAT    TCAT AAG CT      TTTAGACTTTAAA CA  TAGGTAT AC TATGTTTATA ATGA TGTACGTTTTCTAC  TTCGTTTGAGTTTGA TTTTTTTAG TATGCTTTTACAATTTAAG TATATGTACACGTGATCTTCTGTTTTAG  
AAA    GGC  -                           C          C                     ACAA    C   T  -----A             C  CT       C  A          C    A              CC               A         -                   -                            CA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End