SE2850813

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9818
  • Sorghum bicolor
  • SE2850813
  • PIF/harbinger
  • To3
  • chromosome_5:51520245-51520720
  • GAA
  • GGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAA            -----TT      AGTGAAAAATTTTCGGTACTGTAGCACTTTCGTTTGTTTGTGATAAATATTATCTAATCATGGACTAACTAGGATCAAAAGATTTGTCTCGTGATTTACAGCTAAACTATATAATTAGTTTTTGTTTTTGTCTATATTTAATGTTTTATGCATGTGCCACAAGATTCGATGTGACGGAGAATCTTGAAAACTTTTTGGTTTTCGGGGTGAAC
   GGCCTTGTTTAG       CCGAAA                                                                                                                                                                                                                    
   ||||||||||||       ||||||                                                                                                                                                                                                                    T
   CCGGAACAAATC       CGTTTT                                                                                                                                                                                                                    
AAG            CGTCAAA      AAAAAACAAAAACCGATGACATCGTAAAGCAAAAATAAATTGTTTGTAACAGGTTGGTGCCTCATTGATCCGAGTTTTCTAAGTAGAGTGTTTAATGTCCATTTGACACGTCAATTAAAAATAAAAATAGATATAAATTATGAGGTACGTACGCTGGTTTCTAAGCTACACTGCCCCTTAGAATTTTTAAAAACACTTGATTTGTTCCGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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