SE2810821

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9826
  • Sorghum bicolor
  • SE2810821
  • Tc1/Mariner
  • St6
  • chromosome_2:8935007-8935266
  • TA
  • TACTCCCTCCGTCCACCAAAGAGTCAATTTCTAGAGTTGTCCTAAGTCAAATTTTTTAAACTTTAACTAAATTTCTAGAAAAAATGCTAAGATTTGTGGTATCAAATTAGTATCATTAGA

Secondary structure and sequence

TSD    TIR
5'



3'
         C      C       C             -  -  TA             A  C   A     A   C       --AAT  T  G           C    TA       TA  TTCATCATA
TACTCCCTC GTCCAC AAAGAGT AATTTCTAGAGTT GT CC  AGTCAAATTTTTT AA TTT ACTAA TTT TAGAAAA     GC AA ATTTGTGGTAT AAAT  GTATCAT  GA         
||||||||| |||||| ||||||| ||||||||||||| || ||  ||||||||||||| || ||| ||||| ||| |||||||     || || ||||||||||| ||||  |||||||  ||         G
ATGAGGGAG CAGGTG TTTCTTA TTAAGGATCTTAG CA GG  TCAGTTTGAAAAA TT AAA TGATT AAA ATCTTTT     TG TT TAGATACTGTA TTTA  CGTAGTA  CT         
         A      C       A             G  C  --             A  C   C     G   T       CTCAT  -  G           T    CG       TA  TTTATATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End