SE2850822

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9827
  • Sorghum bicolor
  • SE2850822
  • PIF/harbinger
  • To91
  • chromosome_4:14173391-14173760
  • TAA
  • AGAGCATCTCCAGGAGTTTGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                       TA   TA      -- AACTAATAGATCTAGCAAGGTAATAAAAGAAATAGCAACTTTAAATTTTGTTCTTCTCCAACAGTAACCTATAATAGCTTTCTAAAATTTTAAAATTTATAGTAGGGTCCACATCTACTTGTTATTTTTTGGTTTACTAGAGCCGA
  AGAGCATCTCCAGGAGTTTGGTA  ATT  CTTGCT  A                                                                                                                                                  
  |||||||||||||||||||||||  |||  ||||||  |                                                                                                                                                  T
  TCTCGTAGAGGTCCTCAAACCAT  TTG  TTGAAG  T                                                                                                                                                  
AA                       -T   --      GA AGAACTAAAAAATCGTTTTTCTCTTTTTCAGAGGAGGTTGTCAAACCATTTTCTCCATGAATTTTTATTTTTCAACAGTTTATAGGAGAATTTGAGTATTCAAACGTTTCACCTCACTTGAGGGATAGGGAGATCATTTTCTATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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