Plant MITE

SE2850827

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9832
Sorghum bicolor
SE2850827
PIF/harbinger
To4
chromosome_2:53859731-53860033
TTC
G

Secondary structure and sequence

TSD TIR

5'

3'

TTCCTTT   CTCGCACCTGCTCTCGGCCGCTCCTTCCAAATTTTGCGGCCGAAAATTTAGGCCTTGTTTACTTCCGAAAATTTTACTATTTTTTTTAAATTGCTCATCACATCGAATCTTGCGGCACATGCATAGAGCATTAAATATAGATA
       GGT                                                                                                                                               
       |||                                                                                                                                               A
       TCC                                                                                                                                               
     AT   GGAACAAATCAACGTTTTTGTTAATGTTTTACCTATAACATCGTAAAAGTAAACATAAACTATTTATAACAGGTTAGAATCTGATTAATCCCAGTTTTCTAAGTAGAGCGTTTAATATCTGTTTGACACGTTAATCAATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850827

TTCCTTTGGTCTCGCACCTGCTCTCGGCCGCTCCTTCCAAATTTTGCGGCCGAAAATTTAGGCCTTGTTTACTTCCGAAAATTTTACTATTTTTTTTAAATTGCTCATCACATCGAATCTTGCGGCACATGCATAGAGCATTAAATATAGATAAAAAATAACTAATTGCACAGTTTGTCTATAATTTGCGAGATGAATCTTTTGACCCTAATTAGTCTAAGATTGGACAATATTTATCAAATACAAATGAAAATGCTACAATATCCATTTTGTAATTGTTTTTGCAACTAAACAAGGCCTTA

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