SE2850829

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9834
  • Sorghum bicolor
  • SE2850829
  • PIF/harbinger
  • To2
  • chromosome_1:60242545-60242793
  • TTA
  • AGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 C                  TTTC     ---- CCCGTCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGATGAAAATAAAAACTAATTGCACAGTTTGG
  AGGCCTTGTTTAGTTCC AAAAAATTTTGCAAAATT    AGATT    C                                                                             
  ||||||||||||||||| ||||||||||||||||||    |||||    |                                                                              
  TCCGGAACAAATCAAGG TTTTTTAAAATGTTTTAG    CTGTG    C                                                                             
AT                 -                  ----     ACAT GTGAAAGCAAACATAAACTGTTTTTAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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