SE2830837

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9842
  • Sorghum bicolor
  • SE2830837
  • hAT
  • Hat58
  • chromosome_3:3757413-3757583
  • ACTATTAG
  • CTATTAGCACTGGCGAAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
A   T   -  C           GAGCAA  TT  G  -         T    TG    TACA     TTGA    TAATT    T  AATT
 CTA TAG CA TGGCGAAGCTA      AT  GA GG GGGTGCGGC GCCT  TAGA    TAGAT    ATCA     ATGG GG    
 ||| ||| || |||||||||||      ||  || || ||||||||| ||||  ||||    |||||    ||||     |||| ||     
 GAT ATC GT ACCGCTTCGGT      TA  CT CC CCTACGCCG TGGG  ATTT    ATTTA    TAGT     TATC CC    
    T   A  C           ---GCA  TT  A  A         -    TG    TAAA     ----    -TACT    -  AATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3