SE2830839

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9844
  • Sorghum bicolor
  • SE2830839
  • hAT
  • Hat89
  • chromosome_10:44480931-44481453
  • TCAACGTG
  • ACGTGCAGTGGCGGAT

Secondary structure and sequence

TSD    TIR
5'



3'
TCA    --   G        -  - GAAATGGACCAAGAGGGGGGCTAAATAATACATGTTAAATTTTTTTTCCTCACTCAATCCAGTACACTAAGGTCTTGTTTAGTTCCAAATTTTTTTGCAAAATACGAATAGTAGCATTTTCGTTTGTATTTGACAAATATTGTCCGATCATGGACTAACTAGGCTTAAAAGATTCGTCTCGTAAATTACAGGTAGACTGTGTAATTAGTTTATCTATATTTAGTGCTTCATACATGTG
   ACGT  GCA TGGCGGAT CC A                                                                                                                                                                                                                                              
   ||||  ||| |||||||| || |                                                                                                                                                                                                                                              C
   TGCA  TGT ACCGCCTA GT C                                                                                                                                                                                                                                              
  G    AC   A        C  G TCCCCCCGACCCCACCGACGTCGGGGGGAGAACCCGAGTTTAAAAAAATTGTGTAAAAGAAAAAAATCGTTTTCTGAAGTATATAAATCATAAAAAGATACGAATAAAATACTTAGAAACGAAACTTGTGAAACTTAGTTATAACTTAATAGTTAGAATCGATATAGATAATCCGGAACAAATCAAGGGTTTTATAAAATGTTTTAAAAAGTCTAAAGGGTAGTGTAGATTAGAACGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End