Plant MITE

SE2850844

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9849
Sorghum bicolor
SE2850844
PIF/harbinger
To1
chromosome_2:12739919-12740167
TAA
AGGCCTTGTTTAGTTCTAAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TA              ----          TTTT G     GGAACCG       -  C  TT  ---- TTT    --- ATATTGTCTAATTATAGAGTAACTAGACTTAAAAGATTCATCTCGCGATTTACAG
  AGGCCTTGTTTAGT    TCTAAAAATT    A TTTTC       TAGTACT TT GT  TT    A   GACA   A                                                       
  ||||||||||||||    ||||||||||    | |||||       ||||||| || ||  ||    |   ||||   |                                                       G
  TCCGGAACAAATCA    GGGTTTTTAG    T AAAAG       TTCTAAG GG AG  TG    T   TAGA   T                                                       
AA              AATA          TTTT G     -------       G  C  --  TAAC ---    ACG CGTATACGTACCTCGTGATTTATATCTGCTTTTATTTATGATTAACGTGTCAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850844

TAAGGCCTTGTTTAGTTCTAAAAATTTTTTAGTTTTCGGAACCGTAGTACTTTCGTTTTTATTTGACAAATATTGTCTAATTATAGAGTAACTAGACTTAAAAGATTCATCTCGCGATTTACAGGTAAACTGTGCAATTAGTATTTATTTTCGTCTATATTTAGTGCTCCATGCATATGCTGCAAGATTCAATGTGACGGGGAATCTTGAAAAGTTTTTGATTTTTGGGATAAACTAAACAAGGCCTAA

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