SE2850845

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9850
  • Sorghum bicolor
  • SE2850845
  • PIF/harbinger
  • To65
  • chromosome_3:11196006-11196376
  • TTA
  • AGGCCAGTCTCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT           AA   ATA    CACTGCATGGTTTCACATACCAACACGTCATCAAGATTGAAATGAAACCATCTATGAAATAACCCCAGCAATGAAGCATTTCACTTTGTTGTTTCCAAGGCTAAGCAAAGCATTTAATTGTTGCAAAATGATTGGATCACATGCAAGATGGTGAAACGATC
  AGGCCAGTCTC  TGG   GTGT                                                                                                                                                                 
  |||||||||||  |||   ||||                                                                                                                                                                 T
  TCCGGTCAGAG  ACC   CCAA                                                                                                                                                                 
AT           AC   --C    AGTGAACCTACAGTACGTGTAAATAATCTCGCGGTACAGTCGTTTTGACGTGAAAAACGTACTTTGCTTCTCCTCTCTCTTCCTTCATCAAAGTGGTACCACTTTGAGGCGCCCGCAACAAAGGGTGCGCCACTTTGCCCTACTTTAGGGGTGACTCCCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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