SE2850848

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9853
  • Sorghum bicolor
  • SE2850848
  • PIF/harbinger
  • To11
  • chromosome_1:63034047-63034291
  • TTA
  • AGGTCTTGTTTAGTTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 CAAAAAAA          TTTTCA    TCCAGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGATAAAAAATAACAAATTATACAATTTACTTG
  AGGTCTTGTTTAGTTCT        TTTGCAAAAT      GATT                                                                               
  |||||||||||||||||        ||||||||||      ||||                                                                                
  TCCGGAATAAATCAAGA        AAACGTTTTA      TGTG                                                                               
AT                 ---TAAAA          ----CC    GCATCGTAAAAGCAAACATAAACTGTTTATAAAAGATTAGTAACTGATTGATCCGAATTTTCTAAGCAGAGCGTTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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