SE2850849

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9854
  • Sorghum bicolor
  • SE2850849
  • PIF/harbinger
  • To2
  • chromosome_10:56036514-56036762
  • TAA
  • AGGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -                 CGACAC  T   A  TTC      AT   ACAAAAATTATCCAATCATAGACTAACTAGGCTCAAAAGATTCGTTTCGTCAATTTCGACCA
  AGGCCTTGTTTAGTTCC AAAAAATTTTGCAAAAT      TG AGC CT   GTTTGT  TTG                                                              
  ||||||||||||||||| |||||||||||||||||      || ||| ||   ||||||  |||                                                               
  TCCGGAACAAATCAAGG TTTTTTAAAACGTTTTA      TC TAA GG   GGCAGT  AGC                                                              
AA                 G                 -AAAAG  -   -  ---      GT   TTAGAAATCTGCATACGTACTTCATAATTTATATCTACTTTTATTTTTGATTAACGTGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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