SE2850852

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9857
  • Sorghum bicolor
  • SE2850852
  • PIF/harbinger
  • To3
  • chromosome_4:10059348-10059589
  • TAA
  • AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 CTCCAAAAACCAAAAACTTTTT     -------  TCCGTCACATCGAATCTTGCGGCACATGCATAAGACACTAAATATAGACAAAAATAAAAACTAATTGTACAG
  AGGCCTTGTTTAGTTCC                      AAGAT       TC                                                                        
  |||||||||||||||||                      |||||       ||                                                                         
  TCCGGAACAAATCAAGG                      CTCTG       GA                                                                        
AA                 -----CTTAAAAAAAACCAAAA     ACATCGT  AAACAAAAATAAACTATTTGTAACAGATTAGTACCTCATTGACCCGAATTTTCTAAGTAGAGCACTAAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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