SE2850853

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9858
  • Sorghum bicolor
  • SE2850853
  • PIF/harbinger
  • To4
  • chromosome_9:49549150-49549395
  • TAA
  • AGGCCTTGTTTAGTTAAAAAATTTACAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              ---     -     A    ------         GT ----  A  TTT  -    ---   T ACAAATATTGTCTAATCATGGACTAATTAGGCTTAAAATATTCGTCTCACAAATT
  AGGCCTTGTTTAGT   TAAAA AATTT CAAA      ATGGATATT  A    GC CT   GT TTAT   ATT G                                                       
  ||||||||||||||   ||||| ||||| ||||      |||||||||  |    || ||   || ||||   ||| |                                                       A
  TCCGGAACAAATCA   GTTTT TTAAA GTTT      GTCTAAGAG  G    AT AG   AT ATAA   TAT G                                                       
AA              ACG     C     C    TTAAAA         -- CAGT  -  ---  T    CAC   - TATGTACCTCGTAATTTATATCTATTTTCTTTATTGATTAACGTATCAAATGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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