SE2830860

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9865
  • Sorghum bicolor
  • SE2830860
  • hAT
  • Hat60
  • chromosome_3:9898146-9898319
  • GGGTCATG
  • GGGTCATGCAGTGGCGAATCCAGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
     G  ATG   T        C    ---------   A  TTCATCGGG CATCACATTTATACAGTGGGGTCGGCACCATTGTTTAACTATGATG
   GG TC   CAG GGCGAATC AGCT         ATG AG         T                                              
   || ||   ||| |||||||| ||||         ||| ||         |                                              A
   CT GG   GTC CCGCTTAG TCGG         CCC CA         G                                              
GTA  G  ---   C        A    ATATGATAA   -  --------- TAGACTGGGGCTACTGAAACTTTTTTTTAATTACCTCTTAATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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