Plant MITE

SE2850864

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9869
Sorghum bicolor
SE2850864
PIF/harbinger
To14
chromosome_10:44481020-44481318
GAA
G

Secondary structure and sequence

TSD TIR

5'

3'

GAATCTTT   TT  ACACTT   A   ATATTGAATTATCAATCTTAGCTATATCTTTAGGCCTTGTTTAGTTCCCAAAATATTTTACAAAATTTTTCAGATTTCCCATCACATCTAATCTTGCGGCACATGTATGAAGCACTAAATATAGATAA
        GCT  GA      TGA TCA                                                                                                                                
        |||  ||      ||| |||                                                                                                                                 
        TCC  GA      ACA AAT                                                                                                                                
      AT   -A  ------   -   CAAGGTTTAAAAAAACGTTTTATGCTTATCATCGTAAAAGCAAACATAAACTGTTTATAACAGGCTAGTACCTGATTGATCCGAATTTTCTAAGCAGAGCATTTAATGTCCATCTGACACATTAATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850864

GAATCTTTGCTTTGAACACTTTGAATCAATATTGAATTATCAATCTTAGCTATATCTTTAGGCCTTGTTTAGTTCCCAAAATATTTTACAAAATTTTTCAGATTTCCCATCACATCTAATCTTGCGGCACATGTATGAAGCACTAAATATAGATAAACTAATTACACAGTCTACCTGTAATTTACGAGACGAATCTTTTAAGCCTAGTTAGTCCATGATCGGACAATATTTGTCAAATACAAACGAAAATGCTACTATTCGTATTTTGCAAAAAAATTTGGAACTAAACAAGACCTTA

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