Plant MITE

SE2830867

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9872
Sorghum bicolor
SE2830867
hAT
Hat61
chromosome_3:54259974-54260157
GTTGTGCA
TGTGCACAGGGGCGAAGCCACGTTGGCTTTCCCTGGTGCACG

Secondary structure and sequence

TSD TIR

5'

3'

GT      --               G  --    TT            TCCACCAT    A     TAGTTTGTTAATACCTGCCTTAAATTTTCCATA
  TGTGCA  CAGGGGCGAAGCCAC TT  GGCT  CCCTGGTGCACG        GGTA AATAA                                 
  ||||||  ||||||||||||||| ||  ||||  ||||||||||||        |||| |||||                                  
  ACGTGT  GTCCCCGCTTCGGTG AG  TTGA  GGGACCACGTGT        GAGA AGTTT                                 
        TG               G  TT    TT            --------    T     GTATTTCCTTACATATTTTAAACTTTCTTTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830867

GTTGTGCACAGGGGCGAAGCCACGTTGGCTTTCCCTGGTGCACGTCCACCATGGTAAAATAATAGTTTGTTAATACCTGCCTTAAATTTTCCATATATTTTCTTTCAAATTTTATACATTCCTTTATGTTTGATAGAGTGTGCACCAGGGTTAGTTTTGAGGTGGCTTCGCCCCTGGTTGTGCA

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