Plant MITE

SE2810869

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9874
Sorghum bicolor
SE2810869
Tc1/Mariner
St9
chromosome_8:42477878-42478140
TA
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAA

Secondary structure and sequence

TSD TIR

5'

3'

                                                    -CTTTCC              T     --TTATAA   ATAATTATTATGGTACTAACTAAGTATCATTAGATTTTTTCTT
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAA       TATGTTTGACCAAA TTATA        ATA                                           
||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||        |||                                            
ATGAGGGAGGTAGGGTTTAACATTCAGTAAGGTTCTTAGAACCTCTCAGTTT       GTGCAAACTGGTTT AATAT        ATG                                           
                                                    CATAAAA              T     CTCTTTTT   ATTCTAAACATTGCATTTCACTCATATGATACTTTTATATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810869

TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAACTTTCCTATGTTTGACCAAATTTATATTATAAATAATAATTATTATGGTACTAACTAAGTATCATTAGATTTTTTCTTAATTATATTTTCATAGTATACTCACTTTACGTTACAAATCTTAGTATTTTTCTCTATAATTTTGGTCAAACGTGAAAATACTTTGACTCTCCAAGATTCTTGGAATGACTTACAATTTGGGATGGAGGGAGTA

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