SE2830870

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9875
  • Sorghum bicolor
  • SE2830870
  • hAT
  • Hat42
  • chromosome_3:813841-814109
  • ACAGTGAT
  • CAGTGATCAGCGACGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 A  G  A    C      -    -    --   GGCTA  ---     TCCAGCCCCCCCTACCGCTGCTGGCCCAGTGGAATTTTTAGTGCTCTTCTTCTAATTTTAGACACAAATTTATAAGGTAGGGTGGGCTGAAC
  CA TG TCAG GACGAA GCCA GCAG  TGG     GG   GGGGC                                                                                            
  || || |||| |||||| |||| ||||  |||     ||   |||||                                                                                            A
  GT AC AGTC CTGCTT GGTC TTTT  AAA     TC   CCCGA                                                                                            
TA  G  -    C      C    C    TT   -----  CTC     CTTGTTTTCAAGATGGAGTTGAATCGAGATGATAATGAGGAGCATTTATATCTAATTACTACTTTAAGTTTTTTATATAGATTTTTTATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3