Plant MITE

SE2850872

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9877
Sorghum bicolor
SE2850872
PIF/harbinger
To1
chromosome_5:48388415-48388660
TCA
AGGCCTTGTTTAGTTCATCCAAA

Secondary structure and sequence

TSD TIR

5'

3'

TC             TTC       CCAAAAA   TTC  -    -  -------  GTCACATCAAATCTTACGGCATATGCATAGAGCATTAAATATAGATGAAAATAAAAACTAATTGTACAGTTTAT
  AGGCCTTGTTTAG   ATCCAAA       CTT   AA GATT CC       TC                                                                          
  |||||||||||||   |||||||       |||   || |||| ||       ||                                                                           
  TCCGGAACAAATC   TAGGTTT       AAC   CT AAAC GT       TG                                                                          
AC             ---       -AAAAAA   ---  A    T  GACATCG  AAAGCAAAAATAAACTGTTTGTAACAGGTTAATATCTCATTGATTCGAATTTTCTAAGCAGAGCACTAAATGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850872

TCAGGCCTTGTTTAGTTCATCCAAACCAAAAACTTTTCAAGATTCCTCGTCACATCAAATCTTACGGCATATGCATAGAGCATTAAATATAGATGAAAATAAAAACTAATTGTACAGTTTATATGTAAATCACGAGACGAATCTTTTAAGCTTAGTTACTCTATAATTGGACAATGTTTGTCAAATAAAAACGAAAGTGCTACAGTGTCAAAATCCAAAAAAAATTTGGATCTAAACAAGGCCTCA

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