SE2850875

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9880
  • Sorghum bicolor
  • SE2850875
  • PIF/harbinger
  • To11
  • chromosome_1:72281169-72281405
  • TTA
  • TAGGGGATGTTTGGTTGGGGTTGTTAAAGTTTAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
T     -GA          G G             A -A       TA  ATTTTCGTTTTATTTGACAATTAGTGTCCAATCATGGACTAATTAGGCTCAAAAGATTCGTCTAGCAAATT
 TAGGG   TGTTTGGTTG G TTGTTAAAGTTTA C  GGTACTG  GC                                                                       
 |||||   |||||||||| | ||||||||||||| |  |||||||  ||                                                                        
 ATTCC   ACAAACCAAC T GGCAATTTCAAAT G  GGTAGTA  TA                                                                       
      GGG          G G             G CA       --  GCTTATAAACCTGTGTACGTACCTCATGATTTCTATTTGATAAATGCTTTGATTTTTGTGTCGATCTCTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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