SE2850878

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9883
  • Sorghum bicolor
  • SE2850878
  • PIF/harbinger
  • To37
  • chromosome_10:552245-552596
  • TTA
  • AGGGCCTGTTTAGATT

Secondary structure and sequence

TSD    TIR
5'



3'
TT   G         A  -GGGAA             GA    A        G GTC   AGA    CG    G --GTTTT    AAC   T    -    A          -CTC  CA    AC   A    A     A      A  A   A     C      -A  T   GGTTA
  AGG CCTGTTTAG TT      TGAAAATTTTTTG  TGTC CATCGGAT T   GGA   ATGT  GGAG G       TAGA   TAA AAAA AAAC AATTACATAG    GT  GGAA  TGC AGAC AATTT TTAAGC TA TTA TCTGT ATTAGC  TA GTG     
  ||| ||||||||| ||      |||||||||||||  |||| |||||||| |   |||   ||||  |||| |       ||||   ||| |||| |||| ||||||||||    ||  ||||  ||| |||| ||||| |||||| || ||| ||||| ||||||  || |||     C
  TCC GGACAAATC AA      GTTTTTAAAAAGT  GTAG GTAGCTTA A   CCT   TACG  CCTT T       ATCT   ATT TTTT TTTG TTAATGTGTC    CA  TCTT  GCG TCTG TTAGA AATTCG AT AAT AGGTA TAATCG  AT CAC     
AT   G         A  GGGTGG             AG    G        G -AA   GTG    TA    G AATTTAT    ---   T    A    A          AAAT  AC    -A   C    C     A      G  C   G     C      GA  T   GATGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End