Plant MITE

SE2850879

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9884
Sorghum bicolor
SE2850879
PIF/harbinger
To12
chromosome_9:3030110-3030364
TTA
AGGCCTTGTTTAGTTCCGAAAACTTTTTAGTTTTCGCAACTGTAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

TT               -----               ---      CA  ---------        TTTTGTTTGTT      --  TGTTTGTGACAAACATTGTCCAATCATAGAGTAACTAGACTTAAAAGATTCAT
  AGGCCTTGTTTAGTT     CCGAAAACTTTTTAG   TTTTCG  AC         TGTAGCAC           TGTTTG  TT                                                     
  |||||||||||||||     |||||||||||||||   ||||||  ||         ||||||||           ||||||  ||                                                      
  TCCGGAACAAATCAA     GGTTTTTGAAAAATT   AGAGGC  TG         ACGTCGTG           GTACTC  TG                                                     
AT               GTTTT               CTA      AG  TAGCTTAGA        --------TAC      TG  ATTTATATCTGTTTTTATTTTTGATTAATGTGTCAAATGGACATTTAGTGCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850879

TTAGGCCTTGTTTAGTTCCGAAAACTTTTTAGTTTTCGCAACTGTAGCACTTTTGTTTGTTTGTTTGTTTGTTTGTGACAAACATTGTCCAATCATAGAGTAACTAGACTTAAAAGATTCATCTCGTGATTTACAGGTAAACTGTGTAATTAGTTTTTATTTTTGTCTATATTTAGTGTCTCATGCATGTGCTGCAAGATTCGATGTGACGGAGAATCTTAAAAAGTTTTTGGTTTTGAACTAAACAAGGCCTTA

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