SE2830880

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9885
  • Sorghum bicolor
  • SE2830880
  • hAT
  • Hat16
  • chromosome_7:63457603-63458146
  • AATACTTA
  • TATAGATGGCC

Secondary structure and sequence

TSD    TIR
5'



3'
AATACTTA     A     --  -   -   GT    --  C    -   -   - CCCGGCGTGCCGTGCTGTGCCGTGCCTGCCCCGGGCCGCACCGTGCCGTCGTGCCAGCCGGACCGTGCCATCACCGTGCCTCGTGCCGGGGGTATAGCCCAAGGCACGGCCCGTGGGCCATCGGGCCGGCCCGAAGGCACGGCGGGCCACCGGACCAAGGTCGTGCCAGGCCAGTAGTAGGCCTATATTTTCTTTTTTTGTTTAGAATTAGCAGGCTATAT
        TATAG TGGCC  AT CGG GCC  GCCG  GC CGGC CCG GTG G                                                                                                                                                                                                                             
        ||||| |||||  || ||| |||  ||||  || |||| ||| ||| |                                                                                                                                                                                                                              
        ATATC ACCGG  CG CGG CAC  GGCA  CG GGCC GGC CCG G                                                                                                                                                                                                                             
ATTCATAA     A     TA  T   G   CG    AC  -    G   G   T CTGTAAAACCGGGCCGGGCCCGTGCCGTGCCGTTGATAGCCCGGGCCGTGCCGTGCCGGGCTCCGAGGCCCGGCACGGACCCGGCGGTGGCACCGGGCACCGTGCCGAGTCCGTGCCGGGCTACGAATTATCGGATCATTTTTTATATTGAAAAATTAAATTTTTTTTTCTTTTACATCCAGACAACCAGGTAGGTGGGTAGGATTAACCGGACAATTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End