SE2850882

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9887
  • Sorghum bicolor
  • SE2850882
  • PIF/harbinger
  • To2
  • chromosome_10:50087152-50087400
  • TAA
  • AGGCCTTGTTTAGTTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 AAAAAAT    CA    ---------------------- G    - - TACCACTTTCGTTTGTATTTGACAAATATTATCCAATCATGTACTAACTAGACTCAAAAGATTCGTCTCTTTA
  AGGCCTTGTTTAGTTCT       TTTG  AAAT                      A AAAT G G                                                                         
  |||||||||||||||||       ||||  ||||                      | |||| | |                                                                         A
  TCCGGAACAAATCAAGG       GTTT  TCTA                      A GCAG G A                                                                         
AA                 -------    --    AAACATTTTAAAAAGTCTAAAG -    T T GTTTAGAAATCTGCGTACATACTTCATAATATATATCTATTTTTATTTTTGATTAACGTGTCAAACCAGCCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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