Plant MITE

SE2810887

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9892
Sorghum bicolor
SE2810887
Tc1/Mariner
St9
chromosome_6:60448333-60448596
TA
TACTTCCTCCGTCCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAGTTTTTCAAATTTGACCAAATTTATA

Secondary structure and sequence

TSD TIR

5'

3'

            C                                        -T       A          TT    ---------------------      -- ATAA   CATTTTTGGTACCAACCAAGTATCATTAGA
TACTTCCTCCGT CCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAG  TTTTCAA TTTGACCAAA  TATA                     TAACAA  A    TAA                              
|||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||  ||||                     ||||||  |    |||                               
ATGAGGGAGGCA GGTTTAATATTCAGTAAGGTTTTTAGAACCTCTCAGTTTT  AAAAGTT AAACTGGTTT  ATAT                     CAGTAT  T    ATC                              
            A                                        GT       C          TT    CTCTCTTTATATTTCTAAATA      TT ----   CATGTGATACTTTTATATTGATTGTTTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810887

TACTTCCTCCGTCCCAAATTATAAGTCATTCCAAGAATCTTGGAGAGTCAAAGTTTTTCAAATTTGACCAAATTTATATAACAAAATAATAACATTTTTGGTACCAACCAAGTATCATTAGATTCTTTGTTAGTTATATTTTCATAGTGTACCTATTTTATGACATAAATCTTTATATTTCTCTCTATATTTTTGGTCAAACTTGAAAATGTTTTGACTCTCCAAGATTTTTGGAATGACTTATAATTTGGAACGGAGGGAGTA

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