SE2850888

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9893
  • Sorghum bicolor
  • SE2850888
  • PIF/harbinger
  • To93
  • chromosome_4:27705635-27705909
  • TTA
  • AGAGCAACTCCAACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 AGTC      TTAA     TAAA  -  TATTTACATGCTATGATAAAAAAAAGTAGGAGCTCAAATTAAGACTCAACTCCAACCCACCTCCTAAACAAGTAAGATAGGGGGTTCTAGATGTG
  AGAGCAACTCCAACCCA    CCTAAA    GCCCT    TT TT                                                                                               
  |||||||||||||||||    ||||||    |||||    || ||                                                                                               A
  TCTCGTTGAGGTTGGGT    GGATTT    GTTCA    GG AT                                                                                               
AT                 -GGA      ----     ----  A  AAGATTTAGATCCCTGAACTAAGTTTTTTTAGTTGAGGTTGGGTGGATGAACCCGAGGGTAAAAGGTACGGGAGGATTTAATATCAAAGTTGGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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