SE2850892

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9897
  • Sorghum bicolor
  • SE2850892
  • PIF/harbinger
  • To1
  • chromosome_5:10728283-10728523
  • TAA
  • AGGCCTTGTTTAGATGCACCCAAAACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C              CCC        --------A       ---- CCCATCATATCGAATCTTGCGGCACATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTACACAGTTTG
  AGG CTTGTTTAGATGCA   AAAACTTT         CAAGATT    C                                                                            
  ||| ||||||||||||||   ||||||||         |||||||    |                                                                             
  TCC GAACAAATCTACGT   TTTTGAAA         CTGTGAC    T                                                                            
AA   C              ---        AACCTAAAA       ATCG GAAAGCAAAAATAAACTGTTTATAACAGGTTAGTACCTCATTGATCCGAATTTTCTAAGCAGAGCGCTAAATGTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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