SE2850895

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9900
  • Sorghum bicolor
  • SE2850895
  • PIF/harbinger
  • To19
  • chromosome_1:4069038-4069254
  • TTA
  • AGGGGGTGTTTGGGACTGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                     CACAAACTT        -----AAA    - CCGTGGAGCAGCTCCACAAAAAACTGGAGTTTGTAGAGTACCTCTTTAGGTGCTCTCACAAC
  AGGGGGTGTTTGGGACTGCTC         TGCTCCAT        CTCC A                                                              
  |||||||||||||||||||||         ||||||||        |||| |                                                               
  TCCCCCACAAACCCTGACGAG         ACGAGGTG        CGAG C                                                              
AT                     ---------        CAAAAAGT    G GAGGTACAAAAAATCGGTTTGCCAAAGTCGAGGTGCGTGAGTCAAGCTCTTTTTTCTTATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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