Plant MITE

SE2850896

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9901
Sorghum bicolor
SE2850896
PIF/harbinger
To71
chromosome_5:18586065-18586391
TTA
AGAGCACTCCCAATGCAGAAACCATTGTGGTTTCTATAGACATTAATT

Secondary structure and sequence

TSD TIR

5'

3'

TT  A       C     -      -CAT             GA        -----   G -  -   CTA    TTTTGCTGATGTGGCAATGTAGTTATTGAAGAGAGAGAGTAAAAATCATAGAAACTGGGTCTAAGTTAGAAACCATGTCTACACAAAATCCAAG
  AG GCACTCC AATGC AGAAAC    TGTGGTTTCTATA  CATTAATT     GCA T GT CAC   AGCA                                                                                              
  || ||||||| ||||| ||||||    |||||||||||||  ||||||||     ||| | || |||   ||||                                                                                               
  TC CGTGAGG TTACG TCTTTG    ATATCAAAGATAT  GTAATTAA     TCT T AT TAT   ATCT                                                                                              
AT  C       -     A      ATGT             GG        AAATA   G G  A   ---    TTGATACCAGGGTTACTTATCAAAGATATCTTATAAAAATATAGGTTAGTGTAAGTAAGAGAGAGGTAAGAATCGGTTAGTATAGTGAAGTACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850896

TTAGAGCACTCCCAATGCAGAAACCATTGTGGTTTCTATAGACATTAATTGCAGTGTCACCTAAGCATTTTGCTGATGTGGCAATGTAGTTATTGAAGAGAGAGAGTAAAAATCATAGAAACTGGGTCTAAGTTAGAAACCATGTCTACACAAAATCCAAGACATGAAGTGATATGATTGGCTAAGAATGGAGAGAGAATGAATGTGATTGGATATAAAAATATTCTATAGAAACTATTCATTGGGACCATAGTTTCTATATATAGTGTCTATAAAAATTAATGGGTATAGAAACTATATGTAGTTTCTAGCATTGGAGTGCCCTTA

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