Plant MITE

SE2850904

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9909
Sorghum bicolor
SE2850904
PIF/harbinger
To1
chromosome_4:12288948-12289416
TTA
AGGCCTCGTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT      C     ----------GT -     AAGATTTCGGATTTCAATACTGTAGCATTTTTGTTTATTTGTGTCAAATATTATTCAATTATAAACTAACTAGGACTAAAATATTTGTCTCGTAATTTATAGGCAAACTGTGTAATTAGTTTTTGTTTTCGTCTATATAAGCTTCATGCATTTGTCGTAAGATTCGATGTGACGGAGAATCTTGAAAACTTTTTGGTTTTTAGGGTG
  AGGCCT GTTTA            T CCGAA                                                                                                                                                                                                               
  |||||| |||||            | |||||                                                                                                                                                                                                                
  TCCGGA CAAAT            G GTTTT                                                                                                                                                                                                               
AT      A     AGAACAAATCAA C     AAAAAACAAAAACCCATGACATCGTAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGATCCGAGTTTTCTAAATAGAGTGTTTAATGTCCATTTGACACGTCAATCAAAAATAAAAGCAGATGTAAATCACGAGGTACGTACGCTGGTTTCTAAGCTACACTGCCCCTTAGAACTTTTTAAAACGCTTGATTTTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850904

TTAGGCCTCGTTTAGTTCCGAAAAGATTTCGGATTTCAATACTGTAGCATTTTTGTTTATTTGTGTCAAATATTATTCAATTATAAACTAACTAGGACTAAAATATTTGTCTCGTAATTTATAGGCAAACTGTGTAATTAGTTTTTGTTTTCGTCTATATAAGCTTCATGCATTTGTCGTAAGATTCGATGTGACGGAGAATCTTGAAAACTTTTTGGTTTTTAGGGTGAACTTTTAGTTCGCAAAATTTTTCAAGATTCCCCGTCACATCGAATCTTTGGTCGCATGCATGGAGCACTAAATGTAGACGAAAATAAAAACTAACTGCACAGTTTACCTGTAATTTGTGAGATAAATCTTTTGAGCCTAGTTACTCCATGATTGGACAATGTTTGTCAAATAAAAACGAAATGCTACAGTACCCAAAAACAAAAAATTTTGCGAACTAAACAAGATAAACAAGGCCTTA

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