SE2850906

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9911
  • Sorghum bicolor
  • SE2850906
  • PIF/harbinger
  • To3
  • chromosome_5:46316582-46316829
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             ---------------  --- ACACCGAAAACCAAAAAGTTTTTAAGATTCTCTGTCACATTAAATCTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAATAAAAACTAATTA
  AGGCCTTGTTTAG               TT   C                                                                                                 
  |||||||||||||               ||   |                                                                                                  
  TCCGGAACAAATC               CT   G                                                                                                 
AA             TACACTTAAAAAAAC  AAA CGATGACATCGTGAAAGCAAACAAACACCATTTATAATAAGTTAGTATCTGATTGATCCCAGTTTTCTAAGCAGAGCGCTAAATGTCAGTTTGACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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