SE2850909

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9914
  • Sorghum bicolor
  • SE2850909
  • PIF/harbinger
  • To4
  • chromosome_9:529554-529793
  • GAG
  • AGGGCCTATTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
  G    C  A       GACATCAAAATTCCAAAA    ATAAGATTCTTCATCACATCGAATCTTTAAACGCATGCATGAAGTATTAAATATAGATAGAAAAACAACTAAGTATACAATTTATCTGTA
   AGGG CT TTTAGAT                  GTTT                                                                                          
   |||| || |||||||                  ||||                                                                                           
   TCCC GA AAATCTA                  GGTT                                                                                          
GAG    A  C       ------------------    AAAAAAAACCTTAAATCAGTGAAAGCAAACATAAACTATTAATAACAGGTTAGTACCTGATTAATCCGAGTTTTATAAGTAAAGTGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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