SE2810914

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9919
  • Sorghum bicolor
  • SE2810914
  • Tc1/Mariner
  • St36
  • chromosome_4:67869289-67869621
  • TA
  • TACTCCCTCCGTCCCTGAAAGAATAGATTTCTAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
                                A  AAGTT   GACA      CA   CTGCCAAATGACCAAGTTACCCTTAATTAATATGAGTTTCACCATTAAGATGCACAGGAATCACTGCTTTGGGCTACGAGCTGTTCACGTCATTTACTCATCCAGCCAACTGT
TACTCCCTCCGTCCCTGAAAGAATAGATTTCT GC     TCA    GATTAG  TAG                                                                                                                 
|||||||||||||||||||||||||||||||| ||     |||    ||||||  |||                                                                                                                  
ATGAGGGAGGCAGGGACTTTCTTATCTAAAGA CG     GAT    TTTTAA  AGG                                                                                                                 
                                C  -----   ----      AC   GGTTTATTTAGTTAAAGATCCTATATACCAGGGGTGACGAGCGGAGCATAAGTAGCACCGTAGGTTCTGCGTGTGCGGAGCAGAGAGAGAGAGAGAGGAAGTAAATCACCACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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