SE2810916

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9921
  • Sorghum bicolor
  • SE2810916
  • Tc1/Mariner
  • St37
  • chromosome_3:11155751-11156220
  • TA
  • TACTCCCTCCATACCTAAAATACCTGACGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A            C        AGGACA         TA  CAAGAAGTGATTAATTAGGGGTTATCTTTCCATCCTTGCCCCTATTAAATAGAAGTGCGTTCGCAATCTGAACAACTATACTTCGTAGTTGGGTTGGCAAGGTCACCGCTTCAGAGGCTTGGACGCCCACGGTTCGAGCTCTCGCAGCCATAACTTTTTTTTGAAAAAAGCGCTCGCGTTTGCATG
TACTCCCTCC TACCTAAAATAC TGACGTTT      AGATTGTGG  AC                                                                                                                                                                                          
|||||||||| |||||||||||| ||||||||      |||||||||  ||                                                                                                                                                                                          G
ATGAGGGAGG ATGGGTTTTATG ACTGCAGG      TCGAGGATA  CT                                                                                                                                                                                          
          C            A        ----AC         -G  TTAAAGTGTCTTCGACTGCAACATTTCGAACGTCGACGTGCGCCATGCCGAAATGGGGACTGCGAGCGCAGGCAAGTCGACCGGCGAGCCGGAGCTACGTTTGCGGGGGCCACGAGTGCAGGGAAGTCGACCGGTTTCGTAATTAGCCGGAGCTACGTTTGCACTTCTACCGGTTGGGCGTGTTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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